Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKIKNVLLSGGSGKRLWPLSRSLYPKQFLKLFDHKSLFELSFKRNASL-VDETLIVCNEKHYFLALEEIKNE--IKNKSVGFLLESLSKNTANAIALSALMSDKEDLLIVTPSDHLIKDFQAYENAIKKAINLAQKGFLVTFGISIEKPNTEFGYIESPNGLDVKRFIEKPSLEKAIEFQKSGGFYFNSGMFVFQAGVFLDELKKHAPTILKGCERAFESLENTHFFEQKIARLSEKSMQDLEDMSIDIALMQQSHKIKMVEL--NAKWSDLGNFNALFEEAANGTKENVSLNQTPIFAKESTNNLVFSHKVSALLGVEDLAIIDTKDALLVAHKDKAKDLKALVSEIETHNQELLQTHTKVYRPWGSYEVLHESGCYKVKILEVKPNARLSLQKHFHRSEHWVVISGMASVELDHQSFELQANESTYIPKNTLHRLANYGKIPLIIIEVQVGEYVGEDDIVRVDDDFNRQNQNA |
| 1LVW Chain:A ((2-241)) | AHMKGIVLAGGSGTRLYPITR-AVSKQLLPIYD-KPMIYYPLSVLMLAGIRDILIISTPRDLPLYRDLLGDGSQFGV-RFSYRVQEEPRGIADAFIVGKDFIG-DSKVALVLGDNVFYGHR-FSEILRRAAS---LEDGAVIFGYYVRDPRPFGVVEFDSEGRVISIEEKPSRP--------KSNYVVPGLYFYDNQVV-EIARRIEPSD------------------RGELE-----ITSV----NEE-YLRMG-KLRVELMGRGMAWLDTGTHDGLLEASSFIETIQKRQGFYIACLEEIAYNNGWITREDVLEMAEKLEKTDYGKYLRDLAEGNFHG--------------------------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1LVW.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -96324 for 1930 contacts (-49.9/contact) +
2D Compatibility (PS) -25383 + (NN) -11845 + (LL) 14432
1D Compatibility (HY) -12800 + (ID) 2000
Total energy: -133920.0 ( -69.39 by residue)
QMean score : 0.432
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