Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | ----------MQNLLIQAENAIALLFLLNDKNLKGKID-----LIYIDPPFATNNHFTITNGRA-TTISNSKNGDIAYSDKVVGM-----DFMEFLKQRLVLLKELLSEQG--SIYVHTDYKIGHYVKVMLDEIFGIQNFRNEITRIKCNPKNFKRIGY-----------------------------------------GNIKDMILFYSKGKNPIFNEPKIPYTPQDLEKRFPKIDKDKRRYTTVPIHAPGEVESGECSKAFKGMLPPKGRHWRTDIATLERWDKEGLIEYSNNNNPRKKIYALEQVGKRVQDIWE---------FKDP-QYPSYPTEKNAQLLDL----IIKTSSNKDSIVLDCFCGSGTTLKSAFLLQRKFIGIDNSDLAIQACKNKLETITKDLFVSQNFYDFLVF |
| 4R2F Chain:A ((38-431)) | GAIKFWDMPWATPAYNDAAKKIAEGFSGANSKATYQIIQWNNFYQTFSSAIASKTGPAVSTGGGFQAFQFEEQGQIAYADKVIEKLKSNGQFDDFLPGVVEPFKT---SKGYVAVPWQLDIRPLWYRKSLFEKA-GVGVPTD-WASLLEAGKKLKGVGAVGFATGSGAGNNIGNHLMIMMMLNNGGGVFTKDGELDVLNDRNVEAVEFLLELVSNGVIDPAAVSYTTDNLNAQWKD---SKAAYGMLTLGVPERV--GDTSGDIVVASPIAGPHGDKAALIF----PNNIMMYTNTPSQEASEEFVVYYLGKLKELWQQKLMNALPVFKSITEMPEFTADPNNVKIVNEYVPIAKTFASQGTALSANLAALDGGQALNQFTQTVLTGKTDAKSALTAFDTGLKSVLKK------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4R2F.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -3428 for 2321 contacts (-1.5/contact) +
2D Compatibility (PS) -32916 + (NN) -5154 + (LL) 2404
1D Compatibility (HY) -9200 + (ID) 2800
Total energy: -51094.0 ( -22.01 by residue)
QMean score : 0.255
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