Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAVITGASSGIGLECVLMLLNQGYKVYALSRHATLCVALNHALCECVDIDVSDSNALKEVFLNISAKEDHCDVLINSAGYGVFGSVEDTPIEEVKKQFSVNFFALCEVVQLCLPLLKNKPYSKIFNLSSIAGRVSMLFLGHYSASKHALEAYSDALRLELKPFNVQVCLIEPGPVKSNWEKTAFENDE-RKDSVYALEVNAAKSFY-SGVYQKALNAKEVAQKIVFLSMSHKIKARYLIGLKTQLLLALYQILPSSWYDSLFRLVVLGRKRDA
3VTZ Chain:A ((8-256))
VAIVTGGSSGIGLAVVDALVRYGAKVVSVSLDE--DVN----VSDHFKIDVTNEEEVKEAVEKTTKKYGRIDILVNNAGIEQYSPLHLTPTEIWRRIIDVNVNGSYLMAKYTIPVMLAIGHGSIINIASVQSYAATKNAAAYVTSKHALLGLTRSVAIDYAP-KIRCNAVCPGTIMTPMVIKAAKMEVGEDENAV---ERKIEEWGRQHPMGRIGRPEEVAEVVAFLASD---RSSFITGACLTVDGGLLSKLPISTPNA-------------
General information:
TITO was launched using:
RESULT:
Template:
3VTZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -175648 for 2032 contacts (-86.4/contact) +
2D Compatibility (PS) -26015 + (NN) -9551 + (LL) 2684
1D Compatibility (HY) -10400 + (ID) 2800
Total energy: -221730.0 ( -109.12 by residue)
QMean score : 0.495
(partial model without unconserved sides chains):
PDB file :
Tito_3VTZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3VTZ-query.scw
PDB file :
Tito_Scwrl_3VTZ.pdb
: