Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKDWNEFEMGAVLFPFEKNAQSEMEKHNDERHYTEQSYFTTSVAHWRVAKPVHNNNICINCFNCWVYCPDAAIL------------SREGKLK-GVDYSHCKG--------CGVCVDVCPTNPKSLWMFEEQIEPATALTQWPQKQEKKKS
4UR3 Chain:D ((328-399))
--------------------------------------------------------FCETCKKCARECPSKAITEGPRTFEGRSIHNQSGKLQWQNDYNKCLGYWPESGGYCGVCVAVCPFTKGNIWIHDGVEWLIDNTNITEVWDGKINT
General information:
TITO was launched using:
RESULT:
Template:
4UR3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -27629 for 253 contacts (-109.2/contact) +
2D Compatibility (PS) -5031 + (NN) -1458 + (LL) 3756
1D Compatibility (HY) -4400 + (ID) 1150
Total energy: -35912.0 ( -141.94 by residue)
QMean score : 0.194
(partial model without unconserved sides chains):
PDB file :
Tito_4UR3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4UR3-query.scw
PDB file :
Tito_Scwrl_4UR3.pdb
: