Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKTNGLFKMWGLFLVLIALVFNACSDSHKEKKDALEVIKQRGVLKVGVFSDKPPFGSVDSKGNYQGYDVVIAKRMALDLLGDENKIEFIPVE-ASARVEFLKANKVDIIMANFTRTKEREKVVDFANPYMKVALGVIS-KDG-VIKNIEELKDKELIVNKGTTADFYFTKNYPNIKLLKFEQNTETFLALLNNKAIALAHDNTLLLAWVKQHPEFKLGIT-SLG-DKDVIAPAIKKGNPKLLEWLNNEIDSLISSDFLKEAYQETLEPIYGDGIKPEEIIFE |
3MPK Chain:A ((23-251)) | --------------------------------REQQWMADHPVVKVAVLNLFAPFTLFRTDEQFGGISAAVLQLLQLRT---GLDFEIIGVDTVEELIAKLRSGEADMAGA-LFVNSARESFLSFSRPYVRNGMVIVTRQDPDAPVDADHLDGRTVALVRNSAAIPLLQRRYPQAKVVTADNPSEAMLMVANGQADAVVQTQISASYYVNRYFAGKLRIASALDLPPAEIALATTRGQTELMSILNKALYSISN-DELASIISRWR---------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3MPK.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -131661 for 1824 contacts (-72.2/contact) +
2D Compatibility (PS) -24408 + (NN) -11905 + (LL) 3304
1D Compatibility (HY) -11600 + (ID) 2250
Total energy: -178520.0 ( -97.87 by residue)
QMean score : 0.607
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