Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDIKACYQNAQALLEGHFLLSSGFHSNYYLQSAKVLEDPKLAEQLALELAKQIQEAHLNIECVCSPAIGGILAGYELARALGVRFIFTERV---DNTM------------TLRRG-FEVKKNEKILVCEDIITTGKSAMECAKVLEEKGAQIVAFGALANRGICKRAHSHLKAQEGACLPSHLPLFALEDFVFDMHKPSSCPLCATSVAIKPGSRGN
1VCH Chain:A ((22-162))
-------------------------PGRRIPLVEFLGDPEFTRAAAEALRPLVP---KEAEILFTTETSPIPLTHVLAEALGLPYVVARRRRRPYMEDPIIQEVQTGEVLWLDRRFAEKLLNQRVVLVSDVVASGETMRAMEKMVLRAGGHVVARLAVFRQGTPGLAVDTVAELPVL----------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1VCH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -82788 for 877 contacts (-94.4/contact) +
2D Compatibility (PS) -12980 + (NN) -3191 + (LL) 4588
1D Compatibility (HY) -4800 + (ID) 1250
Total energy: -100421.0 ( -114.51 by residue)
QMean score : 0.678
(partial model without unconserved sides chains):
PDB file :
Tito_1VCH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VCH-query.scw
PDB file :
Tito_Scwrl_1VCH.pdb
: