Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKNQVK-KILGMSVVAAMVIVGCSHAPKSGISKSNKAYKEATKGAPDWVVGDLEKVAKYEKYSGVFLGRAEDLITNNDVDYSTNQATAKARANLAANLKSTLQKDLENEKTRTVDASGKRSISGTDTEKISQLVDKELIASKMLARYVGKD-RVFVLVGLDKQIVDKVREELGMVKK---
1Q77 Chain:A ((1-138))
---SNAMKVL---LVLTDAYSDCEKAITYAVNFSEK------LGAELDILAVLEDVYNLERANVTFGLPFPP------------EIKEESKKRIERRLREVWEKLTGSTEIPGVEYR-----IGPLSEEVKKFVE-------------GKGYELVVWACYPSAYLCKVIDGLNLASLIVK
General information:
TITO was launched using:
RESULT:
Template:
1Q77.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -21876 for 955 contacts (-22.9/contact) +
2D Compatibility (PS) -14051 + (NN) -1698 + (LL) 2956
1D Compatibility (HY) -7600 + (ID) 1300
Total energy: -43569.0 ( -45.62 by residue)
QMean score : 0.394
(partial model without unconserved sides chains):
PDB file :
Tito_1Q77.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1Q77-query.scw
PDB file :
Tito_Scwrl_1Q77.pdb
: