Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
---------------------------------------------------------MESVETNKNLPIEYRSEQGRLNILGFWIFLGAEIALFATLFATYFVMRKAGSNA--------GHPPAEMFELWLVLIMTFLLLTSSFTCGLAIGEMRKGNVKMLTIYSIITLILGAGFVGFELYEFAHYVTEGVTMQVGSYWSAFFVLLGTHGLHVTVGIFWISFILIQIKMHGLTPKTASKVFISSLYWHFLDVVWIFIFTGVYLLGMVN
2OCC Chain:C ((1-261))
MTHQTHAYHMVNPSPWPLTGALSALLMTSGLTMWFHFNSMTLLMIGLTTNMLTMYQWWRDVIRESTFQGHHTPAVQKGLRYGMILFIISEVLFFTGFFWAFYHSSLAPTPELGGCWPPTGIHPLNPLE--VPLLNTSVLLASGVSITWAHHSLMEGDRKHMLQALFITITLGVYFTLLQASEYYEA---PFTISDGVYGSTFFVATGFHGLHVIIGSTFLIVCFFRQLKFHFTSNHHFGFEAGAWYWHFVDVVWLFLYVSIYWWGS--
General information:
TITO was launched using:
RESULT:
Template:
2OCC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -174892 for 1413 contacts (-123.8/contact) +
2D Compatibility (PS) -20176 + (NN) -9243 + (LL) 792
1D Compatibility (HY) -14800 + (ID) 2500
Total energy: -220819.0 ( -156.28 by residue)
QMean score : 0.356
(partial model without unconserved sides chains):
PDB file :
Tito_2OCC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2OCC-query.scw
PDB file :
Tito_Scwrl_2OCC.pdb
: