Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LYEKLVNKYQDEVTIREEKMPYKLPGLYLNGMIFISKDQSSIEKGCVLVEELMHYKYTVGNITKQETIMDKKQEIFARRKGYEELIPLDDIIACFYLGLREYFEVAEFLEVTEEFLRHTVSHYAEKYGPMYDYGGYFINFGNSIDVYKKF
2L3L Chain:A ((25-135))
MPERLQRREQERQLEVERRKQKR------------QNQEVEKENSHFFVATFARERAAVEELLERAESVERLEEAASRLQGLQKLINDSV----FFLAAYDLRQGQEALARLQAALAERRRGLQPKK-----------------------
General information:
TITO was launched using:
RESULT:
Template:
2L3L.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -8416 for 612 contacts (-13.8/contact) +
2D Compatibility (PS) -11688 + (NN) -3635 + (LL) 1944
1D Compatibility (HY) 2000 + (ID) 900
Total energy: -20695.0 ( -33.82 by residue)
QMean score : 0.399
(partial model without unconserved sides chains):
PDB file :
Tito_2L3L.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2L3L-query.scw
PDB file :
Tito_Scwrl_2L3L.pdb
: