Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKYIDIANIGFKYE-SEPVLENISFQVSAGEFIILTGENGAAKSTLLRIILGILQPDKGSVTFAKKNAD-------GGRLLTGYVPQQIASFNAGFPSTVLELVRSGRFPNGKWFKRLTTKDHAHVEKALKSVEMWDYRHKRIGELSGGQKQRICLARMFATDPDILILDEPQTAMDKQSKIRFYNLLKHEAQVHGKAILMVTHDSEEMEDFVDKHIRLIRKEDVSWKCFSMDLCKEPSKRP
3GFO Chain:A ((5-234))
DYILKVEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQ--LFSASVYQDVSFGAVNMKLP----EDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQG-NPKEVFAE-----
General information:
TITO was launched using:
RESULT:
Template:
3GFO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -130799 for 1785 contacts (-73.3/contact) +
2D Compatibility (PS) -23640 + (NN) -9342 + (LL) 448
1D Compatibility (HY) -12800 + (ID) 2850
Total energy: -178983.0 ( -100.27 by residue)
QMean score : 0.522
(partial model without unconserved sides chains):
PDB file :
Tito_3GFO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3GFO-query.scw
PDB file :
Tito_Scwrl_3GFO.pdb
: