Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LDKIYLNELVFYGYHGVLKEETKLGQTFRVSLILGLSTKKAGISDSVEDTVSYADVYETVKEIVEGKPFKLIEALAEKIASEVLTGYPLLEEVTVKLIKPNPP-IPGHYDSVAVEIERKRSDLNG
1SQL Chain:A ((21-140))
GDKLILKGLKFYGFHGAIAEERTLGQMFLVDIDAWVSLKKAGESDNLEDTISYVDIFSLAKEIVEGSPRNLLETVAELIASKTLEKFHQINAVRVKLSKPNVALIKSTIDYLGVDIFRQR-----
General information:
TITO was launched using:
RESULT:
Template:
1SQL.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -80260 for 861 contacts (-93.2/contact) +
2D Compatibility (PS) -13003 + (NN) -6814 + (LL) -180
1D Compatibility (HY) -9600 + (ID) 2850
Total energy: -112707.0 ( -130.90 by residue)
QMean score : 0.579
(partial model without unconserved sides chains):
PDB file :
Tito_1SQL.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SQL-query.scw
PDB file :
Tito_Scwrl_1SQL.pdb
: