Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEQILLVDGYNVIGAWPELSYLKDRDLEAARDKLVEWMAEYQSYTGYRVVVVFDAQFVRGVKRKSKKYQVEVVFTHEDETADEYIEQKAIEWKNVRTQIMVATSDYTEQWAIFGQGALRISSRELLFEIQEMSKQIGKKIKRIQEEMPKSNLNLDSDVISQLEKWRRGEE----
4LMG Chain:A ((6-143))
LIHLDPVPSFE------------------DRHEIKPWLQKIFYPQGIDIVIERSDS-------------SKVTFKCRSV--------------ACPFRIRAAYSVRLQKWNVVVMNNIHS------HELRFDLITKTDDYKKFKENLRQKN---DEKAIKTFDELEYKASLNLP
General information:
TITO was launched using:
RESULT:
Template:
4LMG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -24881 for 765 contacts (-32.5/contact) +
2D Compatibility (PS) -13011 + (NN) -5541 + (LL) 4576
1D Compatibility (HY) -4400 + (ID) 850
Total energy: -44107.0 ( -57.66 by residue)
QMean score : 0.326
(partial model without unconserved sides chains):
PDB file :
Tito_4LMG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4LMG-query.scw
PDB file :
Tito_Scwrl_4LMG.pdb
: