Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKWSEYANLAQLSLEKFYLADTKEQFLNNFYPTENPEEDNKVFN--YWWLAHLVEVRLDAYLRTKKQADLEIAENTYMHNKNRNGETLIHDFYDDMLWNALAAYRLYKETGKPIYLEDAQLVWQDLVDTGWNNIMGGGFAWRR---PQMYYKNTPVNAPFIILSCWLYNELNETKYLEWAMKTYEWQTKVLVREDGFVEDGIN-RLEDGAIDYEWK---------FTYNQGVYIGANLELYRITKEAKYLDTANKTADTSLKELTEDGI------FKDEGSGGDEGLFKGIFYRYFTDLIE-----ETADKTYRDFVLNSCQILVESAKVDG-----YLLMGMNWKEKPSGKIPYSAELSGMIALEMAAKLER----------- |
| 1VD5 Chain:A ((1-377)) | ------MWQQAIGDALGITARNLKKFGDRFPHVSDGSNKYVLNDNTDWTDGFWSGILWLCYEYTGDEQYREGAVRTVASFRERLDRFENLDHHDIGFLYSLSAKAQWIVEKDESARKLALDAADVLMRR-WRADAGIIQAWGPKGDPENGGRIIIDCLLNLPLLLWAGEQTGDPEYRRVAEAHALKSRRFLVRGDDSSYHTFYFDPENGNAIRGGTHQGNTDGSTWTRGQAWGIYGFALNSRYLGNADLLETAKRMARHFLARVPEDGVVYWDFEVPQEPSSYRDSSASAITACGLLEIASQLDESDPERQRFIDAAKTTVTALRDGYAERDDGEAEGFIRRGSYHVRGGISPDDYTIWGDYYYLEALLRLERGVTGYWYERGR |
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General information:
TITO was launched using:
| RESULT:
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Template: 1VD5.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -109462 for 3016 contacts (-36.3/contact) +
2D Compatibility (PS) -35073 + (NN) -12487 + (LL) 424
1D Compatibility (HY) 8000 + (ID) 2700
Total energy: -151298.0 ( -50.17 by residue)
QMean score : 0.408
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