Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | LNLKDTVKLANGVEMPRLGFGVWKVQDGDEAVNSVKWAIEAGYISIDTAAAYKNEEGVGQAIKES----GIKREDLFVTTKLWNAEQGYESTLAAFDESLRKLELDYVDLYLIHWPV--------------------KGKFKDTWRAFEKLYKDKRVRAIGVCNFHEHHLKELMEDA--EIAPMVNQIELHPQLTQEPLRKFCAENNIVVEAWSPLG----------NGKLLSNPEIKAIADAHGKSVAQVILRWDLQIGVVTIPKSVHQERIIQNADIFDFELTEEEVAKISGLNKDERTGPDPDNFNF |
4GQG Chain:A ((7-300)) | ------VELSTKAKMPIVGLGTWKSPLG-KVKEAVKVAIDAGYRHIDCAYVYQNEHEVGEAIQEKIQEKAVKREDLFIVSKLWPTFFERPLVRKAFEKTLKDLKLSYLDVYLIHWPQGFKSGDDLFPKDDKGNAIGGKATFLDAWEAMEELVDEGLVKALGVSNFSHFQIEKLLNKPGLKYKPVTNQVECHPYLTQEKLIQYCHSKGITVTAYSPLGSPDRPWAKPEDPSLLEDPKIKEIAAKHKKTAAQVLIRFHIQRNVIVIPKSVTPARIVENIQVFDFKLSDEEMATILSFNRNWRA--------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 4GQG.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -132431 for 2188 contacts (-60.5/contact) +
2D Compatibility (PS) -28142 + (NN) -8986 + (LL) -264
1D Compatibility (HY) -25600 + (ID) 5750
Total energy: -201173.0 ( -91.94 by residue)
QMean score : 0.558
|
|
|