Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKKWMVIISIISLVALLGACGNNDNEKDQEDKSTTDSTTKKAKS--SSNESNKAAETKENDTNDKAATTDKGSSNPTKEEKDTSTTTDTPKKETPKSPAKTEAFSFSPSGFKVST-VESILGGDVTTTYLSSSKSFQKDFEALTLFINQYK-VEHVIN--PTKEVSASNPESYLANKNGYVITLDISIKNNSKKDKMYKADQISLLGASKSVGGSLDNFIPSGFHLIGSSSDPYNFTAGKTARGLLTFTMDEATYNDLAKDSQIGVPDPSRFDSSSTKGSSQDNVVAPFPIK--------- |
4P4M Chain:A ((92-378)) | -KPKLKAIQELTQVHGFGP-RAAAALFDREGIFTVDELLQKADSIPSLTDQQRVGIKYFYDINEK---------IPMQESVLHENYLREKCMEVLGKDFSILICGSYRRRHPFSGDVDAILSRTLDAPPLSEPVAATGVLGHFVEFLESLKYLEATMAQGPLKYMGMGRLPPRINTKVYKARRVDIRLIE----TKSVPTAMLTFTGSKNFNVIMRQAAISKGYLL-----NEY---------GLFKLGTPEEARGK-NAGEELGVP-KDELEDKRVEVRSEQDVFDVLGMPYAKPENRDP |
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General information:
TITO was launched using:
| RESULT:
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Template: 4P4M.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 89631 for 1846 contacts (48.6/contact) +
2D Compatibility (PS) -26058 + (NN) -2264 + (LL) 920
1D Compatibility (HY) -7200 + (ID) 2300
Total energy: 52729.0 ( 28.56 by residue)
QMean score : 0.120
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