Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MHQAIGIIEIKGLASAIAVADTMAKVANIQLVDTEKAKGFGWITVKVEGDVAAVNAALEAGEQTAIASDSFIAKKVIPRPGEEIFTVFWPKEEIEPEKPEVMVETEKVEETEAPTEATCNLCHDPLCPRVKGDPRQDCIHFEEEK
4PPD Chain:F ((11-86))
---ALGMVETKGLTAAIEAADAMVASANVMLVGYEKI-GSGLVTVIVRGDVGAVKAATDAGAAAARNVGEVKAVHVIPRP-----------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
4PPD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -40718 for 608 contacts (-67.0/contact) +
2D Compatibility (PS) -8682 + (NN) -5110 + (LL) 4652
1D Compatibility (HY) -4400 + (ID) 1900
Total energy: -56158.0 ( -92.37 by residue)
QMean score : 0.563
(partial model without unconserved sides chains):
PDB file :
Tito_4PPD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4PPD-query.scw
PDB file :
Tito_Scwrl_4PPD.pdb
: