Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRIYTKTGDKGMTRIIGGSKVSKDNIRIDAYGTLDELNSLIGYTITTLGAE-PEIQAELEQIQQQLFDAGGDLATEEGK---RAYKLTSEPVAWLEDRIDIYADEPPEIEKFILPGGTQAASLLHMARTVTRRAEREIVGMLKIASSNEEVLKYVNRLSDYFFAVARVVNYRAGETDIFYKNSELVFRNKKK
2NT8 Chain:A ((37-217))
-KIYTKNGDKGQTRIIGKQILYKNDPRVAAYGEVDELNSWVGYTKSLINSHTQVLSNELEEIQQLLFDCGHDLATPADDERHSFKFKQEQPTVWLEEKIDNYTQVVPAVKKFILPGGTQLASALHVARTITRRAERQIVQLMREEQINQDVLIFINRLSDYFFAAARYANYLEQQPDMLYRN----------
General information:
TITO was launched using:
RESULT:
Template:
2NT8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -56204 for 1349 contacts (-41.7/contact) +
2D Compatibility (PS) -19187 + (NN) -9411 + (LL) 996
1D Compatibility (HY) -14400 + (ID) 4550
Total energy: -102756.0 ( -76.17 by residue)
QMean score : 0.482
(partial model without unconserved sides chains):
PDB file :
Tito_2NT8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2NT8-query.scw
PDB file :
Tito_Scwrl_2NT8.pdb
: