Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LDKEIKYAFVTGASGEIGQAICMSLARAGWNLYLHYYQNKETVEKLLPLLQAEEVD----VILIQADFDDLASLTEIEKQVFQLDAFIHAAGHAHYSLFQDTTDTNIAELWNVHMFMPMRLIRTFMPKLMKSSQGRIIFISSIWGEVGASMEVAYSTVKGAQIAFCRALSQEVGLSGITVNAVTPGVVETKMMDQFSEEEKDNLRQEIPLNRFAQPEEIAETVAFLTSKKASYITGEVLRLNGGWLM
4BNX Chain:D ((28-268))
-----KVALVTGASRGIGQAIALELGRLGA-VVIGTATSASGAEKIAETLKANGVEGAGLVLDVSSDESVAATLEHIQQHLGQPLIVVNNAG--------RMKDDEWFDVVNTNLNSLYRLSKAVLRGMTKARWGRIINIGSVVGAMGNAGQTNYAAAKAGLEGFTRALAREVGSRAITVNAVAPGFIDTDMTRELPEAQREALLGQIPLGRLGQAEEIAKVVGFLASDGAAYVTGATVPVNGGMYM
General information:
TITO was launched using:
RESULT:
Template:
4BNX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -193439 for 1879 contacts (-102.9/contact) +
2D Compatibility (PS) -25312 + (NN) -9307 + (LL) 1116
1D Compatibility (HY) -14400 + (ID) 4150
Total energy: -245492.0 ( -130.65 by residue)
QMean score : 0.536
(partial model without unconserved sides chains):
PDB file :
Tito_4BNX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4BNX-query.scw
PDB file :
Tito_Scwrl_4BNX.pdb
: