Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MLVGVPKEIKNNENRVAMTPASVFSYVNAGHTVYVEKDAGIGSNYQDADFVQAGAKIVETAKEAWD-VDMVVKVKEPIAS-----EYTYFKEGLLLFTYL-HLANEPTLAKALMESKVNSVAYETVELADH--TLPLLSPMSEVAGRMAAQIGAQFLQRTNGGMGVLLGGVPGVERSEVVIIGGGIAGTNAAKIAAGLGANVTILDMNLKRLRELDDIFGNQVQTLMSNDFNIETA------VKKADLVIGAVLIPGAKAPKLVKEHVVKQMIPGSVLVDIAIDQGGIFETTDHVSTHDNPTYEKYGVLHYAVANMPGAVPRTSTLALTNATLPFGLKLANQGLEAAVQNDPFLLRGLNTYQGHITYKAVADSLDLPYTDSKELI |
| 1NM5 Chain:B ((1-299)) | MKIAIPKERRPGEDRVAISPEVVKKLVGLGFEVIVEQGAGVGASITDDALTAAGATIASTAAQALSQADVVWKVQRPMTAEEGTDEVALIKEGAVLMCHLGALTNRPVV-EALTKRKITAYAMELMPRISRANSMDILSSQSNLAGYRAVIDGAYEFARAFPMMMTAAGTVP---PARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGGKFITV----EFRKKQAEAVLKELVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVIIDLAVEAGG-------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1NM5.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -142932 for 2015 contacts (-70.9/contact) +
2D Compatibility (PS) -28244 + (NN) -3054 + (LL) 6252
1D Compatibility (HY) -16800 + (ID) 4700
Total energy: -189478.0 ( -94.03 by residue)
QMean score : 0.363
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