Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LKVRGFEVVNEASRKFPEQTISLPIRGDKGSAGYDFFSNETVTIVPGEKHIFWTDIKSYMQEDEVLNIYVRSSIGIKKGLLLCNGTGIIDSSYYSNPGNDGNIGIAIKNFS-NEPVSIEAGERVAQGVFQKYLVADTDI------VANESRVGGVGSTGR
1SJN Chain:A ((8-132))
--------------VRLDPGLPLPSRAHDGDAGVDLYSAEDVELAPGRRALVRTGVAVAVPFGMVGLVHPRSGLATRVGLSIVNSPGTIDAGYR------GEIKVALINLDPAAPIVVHRGDRIAQLLVQRVELVELVEVSSFDE---------------
General information:
TITO was launched using:
RESULT:
Template:
1SJN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -47424 for 808 contacts (-58.7/contact) +
2D Compatibility (PS) -12411 + (NN) -1117 + (LL) 924
1D Compatibility (HY) -6400 + (ID) 1650
Total energy: -68078.0 ( -84.25 by residue)
QMean score : 0.401
(partial model without unconserved sides chains):
PDB file :
Tito_1SJN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SJN-query.scw
PDB file :
Tito_Scwrl_1SJN.pdb
: