Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEKKVGTDRVKRGMAQMQKGGVIMDVVNAEQAKIAEEAGAVAVMALERVPSDIRAAGGVARMADPRIVEEVMKAVSIPVMAKARIGHITEARVLEAMGVDYIDESEVLTPADDEFHLLKSDFTVPFVCGCRDIGEALRRIGEGAAMLRTKGEPGTGNIVEAVRHMRQVNGQIRQIAGMTDDELMVAAKNFGAPYELIKEIKTLGKLPVVNFAAGGVATPADAALMMELGADGVFVGSGIFKSDNPAKFASAIVQATTYYTDYELIGKLSKELGSPMKGIEMSRLNPEDRMQDRSF
4WY0 Chain:F ((26-281))
----------------MQKGGVIMDVVNAEQAKIAEAAGAVAVMALERV--------GVARMADPTVIEEVMNAVSIPVMA-VRIGHYVEARVLEALGVDYIDESEVLTPADEEFHIDKRQFTVPFVCGCRDLGEAARRIAEGASMLRTKGEPGTGNIVEAVRHMRKVNAQIRKVVNMSEDELVAEAKQLGAPVEVLREIKRLGRLPVVNFAAGGVTTPADAALMMHLGADGVFVGSGIFKSENPEKYARAIVEATTHYEDYELIAHLSKGL-----------------------
General information:
TITO was launched using:
RESULT:
Template:
4WY0.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -172730 for 2127 contacts (-81.2/contact) +
2D Compatibility (PS) -27185 + (NN) -15033 + (LL) 2320
1D Compatibility (HY) -31600 + (ID) 9900
Total energy: -254128.0 ( -119.48 by residue)
QMean score : 0.651
(partial model without unconserved sides chains):
PDB file :
Tito_4WY0.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4WY0-query.scw
PDB file :
Tito_Scwrl_4WY0.pdb
: