Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNIIGIAACTSGIAHTYIAKEKLTKAGLALGHNVHIETQGTIGIEDELSAEQV-KNADVVIIAADIKISGKD-RFKGKRVVEIPT-------DLAIKAPKQIINKIDKEINN
3NBM Chain:A ((5-108))
KELKVLVLCAGSGTSAQLAN-AINEGANLTEVRVIANSGAYGAHYD------IMGVYDLIILAPQVRSYYREMKVDAERLGIQIVATRGMEYIHLTKSPSKALQFVLEHYQ-
General information:
TITO was launched using:
RESULT:
Template:
3NBM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -44513 for 692 contacts (-64.3/contact) +
2D Compatibility (PS) -10302 + (NN) -3504 + (LL) 644
1D Compatibility (HY) -800 + (ID) 500
Total energy: -58975.0 ( -85.22 by residue)
QMean score : 0.405
(partial model without unconserved sides chains):
PDB file :
Tito_3NBM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3NBM-query.scw
PDB file :
Tito_Scwrl_3NBM.pdb
: