Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPHLSKEAFKKQI---KNGIIVSCQALPGEPLYTESGGVMPLLALAAQEAGAVGIRAN--------SVRDIKEIQEVTNLPIIGIIKREYPPQEPFITATMTEVDQLASLDIAVIALDCTLRERHDGLSVVEFIQKIKRKYPEQLLMADISTFEEGKNAFEAGVDFVGTTLSGYTDYSRQEEGPDIELLNKLCQA---GIDVIAEGKIHTPKQANEINHIGVAGIVVGGAITR---PKEIAERFISGLS
3QJA Chain:A ((39-260))
----PPLDVMAALREPGIGVIAEVK-------------DPAKLAQAYQDGGARIVSVVTEQRRFQGSLDDLDAVRASVSIPVLR---KDF-----VV--QPYQIHEARAHGADMLLLIVAALEQS---VLVSMLDRTESL--GMTALVEVHTEQEADRALKAGAKVI--GVNARDLM-TL--DVDRDCFARIAPGLPSSVIRIAESGVRGTADLLAYAGAGADAVLVGEGLVTSGDPRAAVADLVTAGT
General information:
TITO was launched using:
RESULT:
Template:
3QJA.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -134822 for 1661 contacts (-81.2/contact) +
2D Compatibility (PS) -20316 + (NN) -4946 + (LL) 724
1D Compatibility (HY) -8400 + (ID) 1350
Total energy: -169110.0 ( -101.81 by residue)
QMean score : 0.647
(partial model without unconserved sides chains):
PDB file :
Tito_3QJA.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3QJA-query.scw
PDB file :
Tito_Scwrl_3QJA.pdb
: