Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKKIRLSKFIKMIVVILFLISVAASFYFFHVAQVRDDKSFISNGQRKPGNSLYAYDKSFDKLLKQKIEMTNQNIKQVAWYVPAAKKTHKTAVVVHGFANSKENMKAYGWLFHKLGYNVLMPDNIAHGESHGQLIGYGWNDRENIIKWTEMIVDKNPSSQITLFGVSMGGATVMMASGEKLPSQVVNIIEDCGYSSVWDEL------------KFQAKEMY----------GLPAFPLLY---EV-S----T-----ISKIRAGF----SYGQASSVEQLKKNNLPALFIHGDKDNFVPTSMVYDNYKATAGKKELYIVKGAKHAKSFETEPEKYEKRISSFLKKYEK |
| 3IA2 Chain:A ((8-271)) | ------------------------------------------------------------------------GTQIYFKDWG----SGKPVLFSHGWLLDADMWEYQMEYLSSRGYRTIAFDRRGFGRSDQPWTGNDY---DTFADDIAQLIEHLDLKEVTLVGFSMGGGDVARYIARHGSARVAGLVLLGAVTPLFGQKPDYPQGVPLDVFARFKTELLKDRAQFISDFNAPFYGINKGQVVSQGVQTQTLQIALLASLKATVDCVTAFAETDFRPDMAKIDVPTLVIHGDGDQIVPFETTGKVAAELIKGAELKVYKDAPHGFA-VTHAQQLNEDLLAFLKR--- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3IA2.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -66313 for 1965 contacts (-33.7/contact) +
2D Compatibility (PS) -24164 + (NN) -10244 + (LL) 6992
1D Compatibility (HY) -6800 + (ID) 2050
Total energy: -102579.0 ( -52.20 by residue)
QMean score : 0.329
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