Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKIIIQRVNQASVSIEDDVVGSIEK----------GLVLLVGIAPEDTTEDIAYAVRKITSMRIFSDDEGKMNLSIQDIKGSVLSISQFTLFADTKKGNRPAFTGAADPVKANQFYDIFNQELA---NHVSVETGQFGADMQVSLINDGPVTIVLDTKNK
3KOC Chain:C ((1-157))
MRVVIQRVKGAILSVRKENIGENEKELEIISEIKNGLICFLGIHKNDTWEDALYIIRKCLNLRLWNNDNKTWDKNVKDLNYELLIVSQFTLFGNTKKGNKPDFHLAKEPNEALIFYNKIIDEFKKQYNDDKIKIGKFGNYMNIDVTNDGPVTIYIDTHD-
General information:
TITO was launched using:
RESULT:
Template:
3KOC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -81534 for 974 contacts (-83.7/contact) +
2D Compatibility (PS) -15596 + (NN) -7058 + (LL) 64
1D Compatibility (HY) -14000 + (ID) 2900
Total energy: -121024.0 ( -124.25 by residue)
QMean score : 0.475
(partial model without unconserved sides chains):
PDB file :
Tito_3KOC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3KOC-query.scw
PDB file :
Tito_Scwrl_3KOC.pdb
: