Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLVIAGLGNPGKNYENTRHNVGFMVIDQLAKEWNIELNQNKFNGLYGTGFVSGKKVLLVKPLTYMNLSGECLRPLMDYYDVDNEDLTVIYDDLDLPTGKIRLRTKGSAGGHNGIKSLIQHLGTSEFDRIRIGIGRPVNGMKVVDYVLGSFTKEEAPEIEEAVDKSVKACEASLSK-PFLEVMNEFNAKV
4YLY Chain:A ((1-188))
MKCIVGLGNIGKRFELTRHNIGFEVVDYILEKNNFSLDKQKFKGAYTIERMNGDKVLFIEPMTMMNLSGEAVAPIMDYYNVNPEDLIVLYDDLDLEQGQVRLRQKGSAGGHNGMKSIIKMLGTDQFKRIRIGVGRPTNGMTVPDYVLQRFSNDEMVTMEKVIEHAARAIEKFVETSRFDHVMNEFNGE-
General information:
TITO was launched using:
RESULT:
Template:
4YLY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -120571 for 1545 contacts (-78.0/contact) +
2D Compatibility (PS) -20121 + (NN) -7768 + (LL) 192
1D Compatibility (HY) -19600 + (ID) 4950
Total energy: -172818.0 ( -111.86 by residue)
QMean score : 0.618
(partial model without unconserved sides chains):
PDB file :
Tito_4YLY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4YLY-query.scw
PDB file :
Tito_Scwrl_4YLY.pdb
: