Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
----MRLDKFLKVSRLIKRRTLAKEVADQGRISINGNQAKASSDVKPGDELTVRFGQKLVTVQVNEL-KDTTKKEEAANMYTILKEEKLGE-------------
1DM9 Chain:A ((5-108))
PAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSKPSKIVELNATLTLRQGNDERTVIVKAITEQRRPASEAALLYEETAESVEKREKMALARKLNALT
General information:
TITO was launched using:
RESULT:
Template:
1DM9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -17287 for 604 contacts (-28.6/contact) +
2D Compatibility (PS) -9222 + (NN) -2226 + (LL) 0
1D Compatibility (HY) -4400 + (ID) 1450
Total energy: -34585.0 ( -57.26 by residue)
QMean score : 0.644
(partial model without unconserved sides chains):
PDB file :
Tito_1DM9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1DM9-query.scw
PDB file :
Tito_Scwrl_1DM9.pdb
: