Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIICKTPRELGIMREAGRIVALTHEELKKHIKPGISTKELDQIAERFI-KKQGAIPSFKGYNGFRGSICVSVNEELVHGIPG-SRVLKDGDIISIDIGAKLNGYHGDSAWTYPVGNISDDDKKLLEVTEESLYKGLQEAKPGERLSNISHAIQTYVENEQFSVVREYVGHGVGQDLHEDPQIPHYGPPNKGPRLKPGMVLAIEPMVNAGSRYVKTLADNWTVVTVDGKKCAHFEHTIAITETGFDILTRV
2GTX Chain:B ((3-246))
----KTPEDIEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGYHGYPKSVCISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVGKPTIMGERLCRITQESLYLALRMVKPGINLREIGAAIQKFVEAEGFSVVREYCGHGIGRGFHEEPQVLHYDSRETNVVLKPGMTFTIEPMVNAGKKEIRTMKDGWTVKTKDRSLSAQYEHTIVVTDNGCEILT--
General information:
TITO was launched using:
RESULT:
Template:
2GTX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -87534 for 2114 contacts (-41.4/contact) +
2D Compatibility (PS) -26709 + (NN) -13872 + (LL) 964
1D Compatibility (HY) -22000 + (ID) 5650
Total energy: -154801.0 ( -73.23 by residue)
QMean score : 0.557
(partial model without unconserved sides chains):
PDB file :
Tito_2GTX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2GTX-query.scw
PDB file :
Tito_Scwrl_2GTX.pdb
: