Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | -------------------------MNSNGDKLSLSVQNLANTNEITIVQA-IGELKKSGKDAIPVLVEALKEEGSLCNI--------------------------AAAVLGEFGEDASEAAEELSCLLKSHAED--------TRMAAAISLMRI--------------------GKPSLPFVIKIAQESEGQSCFWAS-WCIAWIDPSCIEPKMYKCLKYEHEHPSGIVAPFAAEEALGKLIAFQLKDKED |
| 2PNN Chain:A ((11-258)) | LYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLN-LHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANG-DFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLK--LEEITNRKGLTPLALAASSGKIGVLAYILQREIH |
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General information:
TITO was launched using:
| RESULT:
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Template: 2PNN.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -47025 for 1023 contacts (-46.0/contact) +
2D Compatibility (PS) -17421 + (NN) -6742 + (LL) 400
1D Compatibility (HY) -6400 + (ID) 1600
Total energy: -78788.0 ( -77.02 by residue)
QMean score : 0.274
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