Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMPEGKIIKALSGFYYVLDESEDSDKVIQCRGRGIFRKNKITPLVGDYVVYQAENDKEGYLMEIKERTNELIRPPICNVDQAVLVFSAVQPSFSTA-LLDRFLVLVEANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYLTSSKDQDSLADIIPHFQ------------------DKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIHTS-GGLVADTPGFSSLEFTDIEEEELGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQYRYDHYVEFMTEIKDRKPRY
1PUJ Chain:A ((18-179))-----------------------------------------------------------------------TEKLKLIDIVYELVDARIPMSSRNPMIEDILK-----NKPRIMLLNKADKADAA----VTQQWKEHFENQGIRSLSINSVNGQGLNQIVPASKEILQEKFDRMRAKGVKPRAIRALIIGIPNVGKSTLINRLAKKNIA-------------------QWVKVGKELELLDTPGILWPK---------------------------------------------------------------------


General information:
TITO was launched using:
RESULT:

Template: 1PUJ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 624 -69188 -110.88 -532.21
target 2D structure prediction score : 0.59
Monomeric hydrophicity matching model chain A : 0.64

3D Compatibility (PKB) : -110.88
2D Compatibility (Sec. Struct. Predict.) : 0.59
1D Compatibility (Hydrophobicity) : 0.64
QMean score : 0.485

(partial model without unconserved sides chains):
PDB file : Tito_1PUJ.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-1PUJ-query.scw
PDB file : Tito_Scwrl_1PUJ.pdb: