Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | -----------MRLTHPTPCPENGETMIDRRRSAWRFSVPLV--CLLAGLLLAATHGVSGGTEIRRSDAPRLVDLVRRAQASVNRLATEREALTTRIDSVHGRSVDTALAAMQRRSAKLAGVAAMNPVHG--PGLVVTLQDAQRDANGRFPRDASPDDLVVHQQDIEAVLNALWNAGAEAIQMQDQRIIAMSIARCVGNTLLLNGRTYSPPYTIAAIGDAAAMQAALAAAPLVTLYKQYVVRFGLGYCEEVHPDLQIVGYADPVRMHFAQPAGPLDY |
3GFD Chain:A ((34-255)) | SVEHIPFSHTRYPEQEMRMRSQEFYELLNKRRSVRFISSEHVPMEVIENVIKAAGTAPSGAHT-----EPWTFVVVKD--------PDMKHKIREIIEEEEEINYMKRMGKRWVTDLKKLRTNWIKEYLDTAPVLILIFKQVHGFNGKKKVHYY-------NEISVSIACGLLLAALQNA---------------------------GLVTVTTTPLNCGPRLRVLLGRPSHEKLLVLLPV----GYPSRDATV------PDLKRKALDQIMVTVHH |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 3GFD.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -56233 for 1398 contacts (-40.2/contact) +
2D Compatibility (PS) -21651 + (NN) -5272 + (LL) 4608
1D Compatibility (HY) -4800 + (ID) 1350
Total energy: -84698.0 ( -60.59 by residue)
QMean score : 0.244
|
|
|