Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTI-LVVTGTGTGVGKTVVCAALASAARQAGIDVAVCKPVQTGTARGDDDLAEVGRLAGV---------TQLAGLARYPQPMAPAAAAEHAGMALPA-RDQIVRLIADLDRPGRLTLVEGAGGLLVELAEPGV-TLRDVAVDVAAAA-LVVVTADLGTLNHTKLTLEALAAQQVSCAGLVIGSWPDPPGLVAASNRSALARIAMVRAALPAGAASLDAGDFAA-MSAAAFDRNWVAGLVG
2QMO Chain:A ((1-220))
-GHMLFISATNTNAGKTTCARLLAQYCNACGVKTILLKPIETGVNDAINHSSDAHLFLQDNRLLDRSLTLKDISFYRYHKVSAPLIAQQEEDPNAPIDTDNLTQRLHNFTKTYDLVIVEGAGGLCVPITLEENML---DFALKLKAKMLLISHDNLGLINDCLLNDFLLKSHQLDYKIAINLKGNNTA-----FHSISLPYIELFNTRSNNPIVIFQQSLKVLMSFALK-----------
General information:
TITO was launched using:
RESULT:
Template:
2QMO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -126883 for 1637 contacts (-77.5/contact) +
2D Compatibility (PS) -22952 + (NN) -17691 + (LL) 1484
1D Compatibility (HY) -4400 + (ID) 2000
Total energy: -172442.0 ( -105.34 by residue)
QMean score : 0.261
(partial model without unconserved sides chains):
PDB file :
Tito_2QMO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2QMO-query.scw
PDB file :
Tito_Scwrl_2QMO.pdb
: