Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIDRPLEGKVAFITGAARGLGRAHAVRLAADGANIIAVDICEQIASVPYPLSTADDLAATVELVEDAGGGIVARQGDVRDRASLSVALQAGLDEFGRLDIVVANAGIA-----MMQAGDDGWRDVIDVNLTGVFHTVQVAIPTLIEQGTGGSIVLISSAAGLVGIGSSDPGSLGYAAAKHGVVGLMRAYANHLAPQNIRVNSVHPCGVDTPMINNEFFQQWLTTADMDAPHNLGNALPVELVQPTDIANAVAWLASEEARYVTGVTLPVDAGFVNKR
4URE Chain:B ((3-248))
-----LEGKTALVTGAGNGIGRTIALTYAAEGANVVVSDISDEWGR------------ETLALIEGKGGKAVFQHADTAHPEDHDELIAAAKRAFGRLDIACNNAGISGEFTPTAETTDAQWQRVIGINLSGVFYGVRAQIRAMLETG-GGAIVNISSIAGQIGIEGITP----YTAAKHGVVGLTKTVAWEYGSKGIRINSVGPAFINTTLVQNVPLETRRQLEQMHALRRLG--------ETEEVANLVAWLSSDKASFVTGSYYAVDGGYLAR-
General information:
TITO was launched using:
RESULT:
Template:
4URE.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -173498 for 2136 contacts (-81.2/contact) +
2D Compatibility (PS) -25401 + (NN) -3832 + (LL) 1532
1D Compatibility (HY) -16400 + (ID) 4950
Total energy: -222549.0 ( -104.19 by residue)
QMean score : 0.514
(partial model without unconserved sides chains):
PDB file :
Tito_4URE.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4URE-query.scw
PDB file :
Tito_Scwrl_4URE.pdb
: