Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MMDLSQRLAGRVAVITGGGSGIGLAAGRRMRAEGATIVVGDVDVE-AGGAAADELS-----GLFVPTDVCDEDAVNGLFDGAAETYGRIDIAFNNAGISPPEDNLIENTELAAWQRVQDVNLKSVYLCCRAALRHMVLAG-KGSIVNTASFVAVMGSATSQISYTASKGGVLAMSRELGVQFARQGIRVNALCPGPVNTPLLQELFAKNPERAARRMVHVPLGRFAEPDEIAAAVAFLASDDASFITASTFLVDGGISSAYVTPL
1RWB Chain:E ((1-251))
---MYKDLEGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKVGGEAIAVKGDVTVESDVINLVQSAIKEFGKLDVMINNAGLENPVSS--HEMSLSDWNKVIDTNLTGAFLGSREAIKYFVENDIKGTVINMSSVHEKIPWPLF-VHYAASKGGMKLMTKTLALEYAPKGIRVNNIGPGAINTPINAEKFA-DPEQRADVESMIPMGYIGEPEEIAAVAAWLASSEASYVTGITLFADGGMT-------
General information:
TITO was launched using:
RESULT:
Template:
1RWB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -137372 for 2125 contacts (-64.6/contact) +
2D Compatibility (PS) -26581 + (NN) -9227 + (LL) 1392
1D Compatibility (HY) -15600 + (ID) 4400
Total energy: -191788.0 ( -90.25 by residue)
QMean score : 0.554
(partial model without unconserved sides chains):
PDB file :
Tito_1RWB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1RWB-query.scw
PDB file :
Tito_Scwrl_1RWB.pdb
: