Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTKTFSHPHFFRSVLRWLQVGYPEGVPGPDRV-ALLSLLRSTPLTEEQIGEVVRHFTENGSPAVADRVIDRDEIAEFISEVTHHDAGPENIQRVAGILAAAGWPLAGVDVGESESGSDRAPASQG
5EJO Chain:A ((522-600))
-----------------------AMITDPMDLLRLFDGVQDSTFSLGTVTEIAQKNLPQ---------YNKQTIKNTIKEYAIRSSGKGDLPRKWVIKDAQNWENLRANAN--------------
General information:
TITO was launched using:
RESULT:
Template:
5EJO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -42002 for 499 contacts (-84.2/contact) +
2D Compatibility (PS) -8221 + (NN) -3294 + (LL) 2056
1D Compatibility (HY) -2400 + (ID) 550
Total energy: -54411.0 ( -109.04 by residue)
QMean score : 0.423
(partial model without unconserved sides chains):
PDB file :
Tito_5EJO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-5EJO-query.scw
PDB file :
Tito_Scwrl_5EJO.pdb
: