Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSVEPDVETLDPPLPPVPDGAVMVTVKIARFNPDDPDAFAATGGWQSFRV---PCLPSDRLLNLLIYIKGYLDGTLTFRRSCAHGVCGSDAMRINGVNRLACKVLMRDLLPKKKGKSLTVTVEPIRGLPVEKDLVVDMEPFFDAYRAIKPYLI--TSGNPPTRERIQSPTDRARYDDTTKCILCACCTTSCPVFW-HEGSYFGPAAIVNAHRFIFDSRDEAAAERLDILNEVDGVWRCRTTFNCTESCPRGIEVTKAIQEVKRALMFTR
3VRB Chain:F ((33-266))
--------------------KRIKTFEIYRFNPEEP---GAKPKLQKFDVDLDKC--GTMVLDALIKIKNEVDPTLTFRRSCREGICGSCAMNIAGENTLAC------ICNIDQNTSKTTKIYPLPHMFVIKDLVPDMNLFYAQYASIQPWLQKKTKINLGEKQQYQSIKEQEKLDGLYECILCACCSASCPSYWWNADKYLGPAVLMQAYRWIIDSRDDSAAERLARMQDGFSAFKCHTIMNCTKTCPKHLNPARAIGEIKMLL----
General information:
TITO was launched using:
RESULT:
Template:
3VRB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -139414 for 1734 contacts (-80.4/contact) +
2D Compatibility (PS) -24761 + (NN) -16924 + (LL) 1520
1D Compatibility (HY) -20800 + (ID) 4850
Total energy: -205229.0 ( -118.36 by residue)
QMean score : 0.448
(partial model without unconserved sides chains):
PDB file :
Tito_3VRB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3VRB-query.scw
PDB file :
Tito_Scwrl_3VRB.pdb
: