Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSKQIEFFFDFGSPTTYLAWTQLPRIAAAHGASIAWRPMLLGGVFKATGNHSPIEVPAKGRYTLHDLARYAKRYGVPLAFNPAFPINTLTLMRGAQGYLGGEGFQPYLKAVFEALWVRQQNLGKPEVVAQVLAEAGFDPDEFLRLVGDEQVKEGLKATTEEAVRRGVFGAPSFFVGDQLF---FGQDRLDFVAEVLAG
3H93 Chain:A ((26-180))
-KIEVVELFWYGCPHCYAFEPTIVPWSEKLPADVHFVRLPALF-G---GI-------------------------------------WNVHGQMFLTLESMGVEHDVHNAVFEAIHKEHKKLATPEEMADFLAGKGVDKEKFLSTYNSFAIKGQMEKAKKLAMAYQVTGVPTMVVNGKYRFDIGSAGGPEETLKLADY
General information:
TITO was launched using:
RESULT:
Template:
3H93.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -89980 for 1117 contacts (-80.6/contact) +
2D Compatibility (PS) -16606 + (NN) -4801 + (LL) 2604
1D Compatibility (HY) -3600 + (ID) 1350
Total energy: -113733.0 ( -101.82 by residue)
QMean score : 0.472
(partial model without unconserved sides chains):
PDB file :
Tito_3H93.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3H93-query.scw
PDB file :
Tito_Scwrl_3H93.pdb
: