Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | -----------------------------------------MDIDLLDNLLFAMVRTG-----TPLLLVALGELVCERSGVLN-LGQEGMMLFGAVIGFMVA-----FSSGSLWLGVL------LAVLAGMLLAALFAGVALYLNANQVACGLALTIFGVGLASFVGAAWVGKPLQGFAPLALPVLGELPLLGRMLFAQDALVYLSLALFAAVAWMLLRSRAGLVLQAVGENPDAASAMGLP----VLRVRTLAVLFGGAMAGLAGAYLSLAYTPMWAENMTAGRGWIALALVVFASWRVLRVLLGAWLFGLASILHL---VAQGVGLSIPANLLAMLPYAATILVLVLLSRD------ALRTRLYAPVSLGQP------WKAGH------------------ |
4FDT Chain:A ((21-425)) | MQTKIQKYAGTAMPYPNRTDGMTPFYINHLGRHGARFPTSRKALDKVEKVLVSAQQENGLTSEGMALLSMIRRLSRLFDGQWGKLSKLGETEQEGIAGRMIRNYPQLFSNSAKIEAIATYVPRSINSMDAFLSCMIRHNPALQVQRSEGKQYNHILRFFDLNKSYVNYKEKGDWLPIYKAFVHKKISPVPIMKKFLLNPEQ--YLDKEAEEFVMALF---SVAAILPDTSIPLNLEDLFTLDEWHRYWQTQNLRQYMSKSSAPVGKMLPVAIAWPLLSEFIRSAQEVISGKSDYQANFRFAHAETVIPFVSLMGIEKTDVQVCRPDSVSVYWKDYEISPMAANVQWLFYRDRDQRIWVKILLNEEAAALPISTACFPYYSWEKTRIFFNQRIEMAKKTLSVFN |
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General information:
TITO was launched using:
| RESULT:
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Template: 4FDT.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -296504 for 2157 contacts (-137.5/contact) +
2D Compatibility (PS) -32077 + (NN) -9730 + (LL) 616
1D Compatibility (HY) -7200 + (ID) 2350
Total energy: -347245.0 ( -160.99 by residue)
QMean score : 0.124
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