Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRAVVELLAGARRLVIFTGAGVSAESGIPTFRDALGGLWARYDPAALATPAAFADDPALVWGWYEWRR--LKVLGVQPNPAHRAIAALSGRIAN-TRLVTQNVDDLHERAGSRDVLHLHGSLHAPRCATCAAAYRDALPDSVEPEEGRRIEPPRCPACGGQVRPGVVWFGEALPEAALREAFAAACECDLLLSVGTSGVVQPAARIPGLALEHGASVVHVNPQPVRTRHPREHCLVGPAGEVLPELLRRAFPG
1S5P Chain:A ((3-233))
------------RVLVLTGAGISAESGIRTFR-AADGLWEEHRVEDVATPEGFDRDPELVQAFYNARRRQLQQPEIQPNAAHLALAKLQDALGDRFLLVTQNIDNLHERAGNTNVIHMHGELLKVRCSQSGQVL-DWTGD-VTPED-------KC-----PLRPHVVWFGE-MP-LGMDEIYMALSMADIFIAIGTSGHVYPAAGFVHEAKLHGAHTVELNLEPSQ---EFAEKYYGPASQVVPEFVEKLLKG
General information:
TITO was launched using:
RESULT:
Template:
1S5P.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -132794 for 1788 contacts (-74.3/contact) +
2D Compatibility (PS) -23537 + (NN) -11859 + (LL) 1720
1D Compatibility (HY) -15600 + (ID) 4850
Total energy: -186920.0 ( -104.54 by residue)
QMean score : 0.468
(partial model without unconserved sides chains):
PDB file :
Tito_1S5P.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1S5P-query.scw
PDB file :
Tito_Scwrl_1S5P.pdb
: