Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTKQHAFTREDLLRCSRGELFGPGNAQLPAPNMLMIDRIVHISDVGGKYGKGELVAELDINPDLWFFACHFEGDPVMPGCLGLDAMWQLVGFYLGWQGNPGRGRALGSGEVKFFGQVLPTAKKVTYNIHIKRTINRSLVLAIADGTVSVDGREIYSAEGLRVGLFTSTDSF
4B0B Chain:B ((3-171))
--KQHAFTREDLLRCSRGELFGPGNAQLPAPNMLMIDRIVHISDVGGKYGKGELVAELDINPDLWFFACHFEGDPVMPGCLGLDAMWQLVGFYLGWQGNPGRGRALGSGEVKFFGQVLPTAKKVTYNIHIKRTINRSLVLAIADGTVSVDGREIYSAEGLRVGLFTSTDSF
General information:
TITO was launched using:
RESULT:
Template:
4B0B.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -129269 for 1312 contacts (-98.5/contact) +
2D Compatibility (PS) -17816 + (NN) -8185 + (LL) 260
1D Compatibility (HY) -25200 + (ID) 8450
Total energy: -188660.0 ( -143.80 by residue)
QMean score : 0.601
(partial model without unconserved sides chains):
PDB file :
Tito_4B0B.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4B0B-query.scw
PDB file :
Tito_Scwrl_4B0B.pdb
: