Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSGIPEITAYPLPTAQQLPANLARWSLEPRRAVLLVHDMQRYFLRPLPE-SLRAGLVANAARLRRWCVEQGVQIAYTAQPGSMTEEQRGLLKDFWGPGMRASPADREVVEELAPGPDDWLLTKWRYSAFFHSDLLQRMRAAGRDQLVLCGVYAHVGVLISTVDAYSNDIQPFLVADAIADFSEA-----------HHRMALEYAASRCAMVVTTDEVLE
3MCW Chain:A ((4-189))
----------------------APLRFSSDKPLLLLIDMQQAVDDPSWGPRNHPQAEQACAGLLQAWRARGLPLIHIRHDSVEP-----------NSTYRPGQPGHAFKPEVEPRPGETVIAKQTNSAFIGTGLEALLRANGWLELVVAGVSTSNSVEATVRMAGNLGFAVCLAEDGCFTFDKTDWHGRRRSADEVHAMSLANLDGEYCRVCGSADILA
General information:
TITO was launched using:
RESULT:
Template:
3MCW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -133449 for 1394 contacts (-95.7/contact) +
2D Compatibility (PS) -18424 + (NN) -8295 + (LL) 2160
1D Compatibility (HY) -5200 + (ID) 1800
Total energy: -165008.0 ( -118.37 by residue)
QMean score : 0.558
(partial model without unconserved sides chains):
PDB file :
Tito_3MCW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3MCW-query.scw
PDB file :
Tito_Scwrl_3MCW.pdb
: