Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MNLCLDSLLNGTQDPKAFGRVAVLFGGKSAEREVSLKSGAMVLQSL-LAAGVDAFGID----VGEDLLQRLVE----------------EKIDRAFIILHGRGGEDGSMQGLLECAGIPYTGSGVLASALAMDKLRTKRVWLSLGLP-TPDYAVLASEDDCREAAQRLGFPLIVKPAHEGSSIGMAKVGGLDELIAAWREAARYDSQVLVEQWISGP-EFTVATL---RGQVLPAIRLGTPHTFYDYDAKYLASDTRYQVPCGLDEAKERELKELTARACDALGIQGWGRADVMQDAEGRFWLLEVNTAPGMTDHSLVPMAARAAGLDFQQLVLAILADSREARG |
2YZM Chain:A ((2-310)) | -------------------RVLLIAGGVSPEHEVSLLSAEGVLRHIPFPTDLAVIAQDGRWLLGEKALTALEAKAAPEGEHPFPPPLSWERYDVVFPLLHGRFGEDGTVQGFLELLGKPYVGAGVAASALCMDKDLSKRVLAQAGVPVVPWVAVRKGEPPVVPFDPP----FFVKPANTGSSVGISRVERFQDLEAALALAFRYDEKAVVEKALSPVRELEVGVLGNVFGEASPVGEVRYEAPFYDYETKYTPGRAELLIPAPLDPGTQETVQELALKAYKVLGVRGMARVDFFL-AEGELYLNELNTIPGFTPTSMYPRLFEAGGVAYPELL------------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 2YZM.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -129823 for 2276 contacts (-57.0/contact) +
2D Compatibility (PS) -31257 + (NN) -15518 + (LL) 1592
1D Compatibility (HY) -21200 + (ID) 5550
Total energy: -201756.0 ( -88.64 by residue)
QMean score : 0.512
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