Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLRKLAAVSLLSLLSAPLLAAECSVDIQGNDQMQFNTNAITVDKSCKQFTVNLSHPGNLPKNVMGHNWVLSTAADMQGVVTDGMASGLDKDYLKPDDSRVIAHTKLIGSGEKDSVTFDVSKLKEGEQYMFFCTFPGHSALMKGTLTLK
4KOB Chain:D ((1-128))
--------------------AECSVDIQGNDQMQFNTNAITVDKSCKQFTINLSHPGNLPKNVMGHNWVLSTAADMQGVVTDGMASGLDKDYLKPDDSRVIAHTKLIGSGEKDSITFDVSKLKEGEQYMFFCTFPGHSALMKGTLTLK
General information:
TITO was launched using:
RESULT:
Template:
4KOB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -62719 for 989 contacts (-63.4/contact) +
2D Compatibility (PS) -13673 + (NN) -4813 + (LL) 2324
1D Compatibility (HY) -16800 + (ID) 6300
Total energy: -101981.0 ( -103.12 by residue)
QMean score : 0.613
(partial model without unconserved sides chains):
PDB file :
Tito_4KOB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4KOB-query.scw
PDB file :
Tito_Scwrl_4KOB.pdb
: