Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MYRPARVTSTSRFLNPYVVCFIVVAGVVILAVTIALLVYFLAFDQKSYFYRSSFQLLNVEYNSQLNSPATQEYRTLSGRIESLITKTFKESNLRNQFIRAHVAKLRQDGSGVRADVVMKFQFTRNNNGASMKSRIESVLRQMLNNSGNLEINPSTEITSLTDQAAANWLINECGAGPDLITLSEQRILGGTEAEEGSWPWQVSLRLNN----AHHCGGSLINNMWILTAAHCFRSNSNPRDWIATSGISTT----FPKLRMRVRNILIHNNYKSATH--ENDIALVRLENSVTFTKDIHSVCLPAATQNIPPGSTAYVTGWGAQEYAGHTVPELRQGQVRIISNDVCNAPHSYNGAILSGMLCAGVPQGGVDACQGDSGGPLVQEDSRRLWFIVGIVSWG--DQCGLPDKPGVYTRVTAYLDWIRQQTGI |
| 1BRU Chain:P ((1-238)) | ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------VVGGEDARPNSWPWQVSLQYDSSGQWRHTCGGTLVDQSWVLTAAHCIS---SSRTYRVVLGRHSLSTNEPGSLAVKVSKLVVHQDWNSNQLSNGNDIALLKLASPVSLTDKIQLGCLPAAGTILPNNYVCYVTGWGRLQTNGASPDILQQGQLLVVDYATCSKPGWWGSTVKTNMICAGGD-GIISSCNGDSGGPLNCQGANGQWQVHGIVSFGSSLGCNYYHKPSVFTRVSNYIDWINSVI-- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1BRU.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -173511 for 1931 contacts (-89.9/contact) +
2D Compatibility (PS) -24952 + (NN) -14452 + (LL) 13992
1D Compatibility (HY) -19600 + (ID) 4350
Total energy: -222873.0 ( -115.42 by residue)
QMean score : 0.244
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