Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MADNFSLHDALSGSGNPNPQGWPGAWGNQPAGAGGYPGASYPGAYPGQAPPGAYPGQAPPGAYPGAPGAYPGAPAPGVYPGPPSGPGAYPSSGQPSATGAYPATGPYGAPAGPLIVPYNLPLPGGVVPRMLITILGTVKPNANRIALDFQRG----NDVAFHFNPRFNENNRRVIVCNTKLDNNWGREERQSVFPFESGKPFKIQVLVEPDHFKVAVNDAHLLQYNHRVKKLNEISKLGISGDIDLTSASYTMI
3I8T Chain:A ((25-162))
---------------------------------------------------------------------------------------------------------------YNPTLPYKRPIPGGLSVGMSVYIQGMAKENMRRFHVNFAVGQDDGADVAFHFNPRFDGW--DKVVFNTMQSGQWGKEEKKKSMPFQKGKHFELVFMVMPEHYKVVVNGNSFYEYGHRL-PVQMVTHLQVDGDLELQSINFL--
General information:
TITO was launched using:
RESULT:
Template:
3I8T.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -96031 for 1014 contacts (-94.7/contact) +
2D Compatibility (PS) -14385 + (NN) -3299 + (LL) -2252
1D Compatibility (HY) -11600 + (ID) 2550
Total energy: -130117.0 ( -128.32 by residue)
QMean score : 0.313
(partial model without unconserved sides chains):
PDB file :
Tito_3I8T.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3I8T-query.scw
PDB file :
Tito_Scwrl_3I8T.pdb
: