Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAEAASCARKGTKYAEGTQPFTVLIEGNIGSGKTTYLNHFEKYKNDICLLTEPVEKWRNVNGVNLLELMYKDPKKWAMPFQSYVTLTMLQSHTAPTNKKLKIMERSIFSARYCFVENMRRNGSLEQGMYNTLEEWYKFIEESIHVQADLIIYLRTSPEVAYERIRQRARSEESCVPLKYLQELHELHEDWLIHQRRPQSCKVLVLDADLNLENIGTEYQRSESSIFDAISSNQQPSPVLVSPSKRQRVAR
2VP2 Chain:B ((12-208))
-----------TKYAEGTQPFTVLIEGNIGSGKTTYLNHFEKYKNDICLLTEPVEKWRNVNGVNLLELMYKDPKKWAMPFQSYVTLTMLQSHTAPTNKKLKIMERSIFSARYCFVENMRRNGSLEQGMYNTLEEWYKFIEESIHVQADLIIYLRTSPEVAYERIRQRARSEESCVPLKYLQELHELHEDWLIHQRRPQSCKVLVLDAD------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2VP2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -100892 for 1509 contacts (-66.9/contact) +
2D Compatibility (PS) -21528 + (NN) -12781 + (LL) 3312
1D Compatibility (HY) -29600 + (ID) 9850
Total energy: -171339.0 ( -113.54 by residue)
QMean score : 0.571
(partial model without unconserved sides chains):
PDB file :
Tito_2VP2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2VP2-query.scw
PDB file :
Tito_Scwrl_2VP2.pdb
: