Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MVNSTHRGMHTSLHLWNRSSYRLHSNASESLGKGYSDGGCYEQLFVSPEVFVTLGVISLLENILVIVAIAKNKNLHSPMYFFICSLAVADMLVSVSNGSETIVITLLNSTDTD-AQSFTVNIDNVIDSVICSSLLASICSLLSIAVDRYFTIFYALQYHNI---MTVKRVGIIISCIWAACTVSGILFIIYSD------------SSAVIICLITMFFTMLALMASLYVHMFLMARLHIKRIAVLPG-------------------------------------------------------------------------------------------------------------------------------------------------------TGAIRQGANMKGAITLTILIGVFVVCWAPFFLHLIFYISCPQNPYCVCFMSHFNLYLILIMCNSIIDPLIYALRSQELRKTFKEIICCYPLGGLCDLSSRY |
| 3PBL Chain:A ((43-472)) | ------------------------------------------------LSYCALILAIVFGNGLVCMAVLKERALQTTTNYLVVSLAVADLLVATLVMPWVVYLEV--TGGVWNFSRICCDVFVTLDVMMCT---ASIWNLCAISIDRYTAVVMPVHYQHGTGQSSCRRVALMITAVWVLAFAVSCPLLFGFNTTGDPTVCSISNPDFVIYSSVVSFYLPFGVTVLVYARIYVVLKQRRRKNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALINMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYGVPLREKKATQMVAIVLGAFIVCWLPFFLTHVLNTHCQTCH---VSPELYSATTWLGYVNSALNPVIYTTFNIEFRKAFLKILSC------------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 3PBL.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -259943 for 1950 contacts (-133.3/contact) +
2D Compatibility (PS) -26721 + (NN) -6890 + (LL) 2860
1D Compatibility (HY) -23600 + (ID) 2900
Total energy: -317194.0 ( -162.66 by residue)
QMean score : 0.271
|
|
|