Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGQKVNPIGFRLKINNNTWDSVWYANK-DYKEKLHQDLFIRSYINESFKHAGLSKIIIERKVDLLSVTIHSSRPGVIIGKKGLDIEKVKQKIAEKVKNSVEVNVVGIKRPEIDAALISSSIAQQLEKRVSFRRAMKKAIQSCLRMGGGGIKVGCSGRLGGAEIARTEWYKEGRLPLHTLRANIDYAFCEAKTIYGIIGVKVWVYIVN
4AQY Chain:C ((2-204))
-GNKIHPIGFRLGITRD-WESRWYAGKKQYRHLLLEDQRIRGLLEKELYSAGLARVDIERAADNVAVTVHVAKPGVVIGRGGERIRVLREELAKLTGKNVALNVQEVQNPNLSAPLVAQRVAEQIERRFAVRRAIKQAVQRVMESGAKGAKVIVSGRIGGAEQARTEWAAQGRVPLHTLRANIDYGFALARTTYGVLGVKAYIFLGE
General information:
TITO was launched using:
RESULT:
Template:
4AQY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -96907 for 1510 contacts (-64.2/contact) +
2D Compatibility (PS) -22146 + (NN) -10737 + (LL) 260
1D Compatibility (HY) -17200 + (ID) 4550
Total energy: -151280.0 ( -100.19 by residue)
QMean score : 0.469
(partial model without unconserved sides chains):
PDB file :
Tito_4AQY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4AQY-query.scw
PDB file :
Tito_Scwrl_4AQY.pdb
: