Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MVKITINSQECEVKPGLTIIQACETVGVEIPRFCYHERLAIAGNCRMCLVEVKGGPPKPVASCAMPVAEGMVIYTDTPKVKKAREGVLEFLLINHPLDCPICDQGGECDLQDITVVYGKGNSRFDEHKRAIPKKHFGQLIEAAMNRCIHCTRCIRFLSDVAGTNELGGIGRGENMEISTYIKKHISSELSGNIIDLCPVGALTSKPYSFTARPWELSHCETIDVLD--AVGSSIRVDYRGPEVMRILPRLNEEVN-------EEWISDKTRFAYDG-LKVQRLDQPYIKR----DNRLVPADWNEALTVAAKKLRS----TKPNKIAAIA----GDLADCESMLLLKEIMQK-LGSSNIDCRQDGAKLIPNNRGSYVFNTTIEGIENVDLCLLINTNPKVEAPIINARIRKRYLQGNFPIASIGPD-IEYLYHVEKL-----GNNPGVLNEIAKGN--HK----------------------------------------------------------------------------------------------------------------FCKLLSAAQNPMLIIGQDALTRDDSES-ILALAGAIAEK-FNMVRNDWNGFNVLHK------------AAARVGGLD-I-----GF-------VPKK----------------DGKN-----------INQ------I----------------L----------EQAESGEIEVVYLLGAD-EINT----------LKLENAFVIYQGHHGDRGAHMADIILPGAAYTEKYATYVNT--EGRVQRAKLAVSPPGEAKEDWSIIKNLSQYLGLSLPYDSLFDVRKKLDAIGPQFRNTDQVVKNKWMSITCNEIKLSSVPFFLKECNFYMTDSISRASKIMANCTKAFYEHAS |
| 2IVF Chain:A ((80-700)) | ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GSHLNICWPQGSCKFYVYVRNGIVWREEQAAQTPACNVDYVDYNPLGCQKGSAFNNNLYGDERVKYPLKRVGKRGEGKWKRVSWDEAAGDIADSIIDSFEAQGSDGFILDAPHVHAGSIAWGAGFRMTYLMDGVSPDINVDIGDTYMGAFHTFGKMH-MGYSADNLLDAELIFMTCSNWSYTYPSSYHFLSEARYKG-AEVVVIAPDFNPTTPAADLHVPVRVGSDAAFWLGLSQVMIDEKLFDRQFVCEQTDLPLLVRMDTGKFLSAEDVDGGEAKQFYFFDEKAGSVRKASRGTLKLDFMPALEGTFSARLKNGKTIQVRTVFEGLREHLKDYTPEKASAKCGVPVSLIRELGRKVAKK-RTCSYIGFSSAKSYHGDLMERSL-FLAMALSGNWG-KPGTGAFAWAYSDDNMVYLGVMSKPTAQGGMDELHQMAEGFNKRTLEADPTSTDEMGNIEFMKVVTSAVGLVPPAMWLYYHVGYDQLWNNKAWTDPALKKSFGAYLDEAKEKGWWTNDHIRPAPDKTPQVYMLLSQNPMRRKRSGAKMFPDVLFPKLKMIFALETRMSSSAMYADIVLPCAWYYEKHEMTTPCSGNPFFTFVDRSVAPPGECREEWDAIALILKKVGERAAARGLTEFNDHNGRKRRYDELYKKFTMDGHLLTNEDCLKEMVDINRAVGVFAKDYTYEKFKKEGQTRFLSMGTGVSR |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 2IVF.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -61708 for 2973 contacts (-20.8/contact) +
2D Compatibility (PS) -40017 + (NN) -11712 + (LL) 13988
1D Compatibility (HY) -3200 + (ID) 3050
Total energy: -105699.0 ( -35.55 by residue)
QMean score : 0.408
|
|
|