Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKRHFETTRRIVIKVGTSSLVQTSG-KINLSKIDHLAFVISSLMNRGMEVILVSSGAMGFGLD---ILKMDKRPQEISQQQAVSSVGQVAMMSLYSQIFSHYQTHVSQILLTRDVVVFPESLQNVTNSFESLLSMGILPIVNENDAVSVDEMDHKTKFGDNDRLSAVVAKITKADLLIMLSDIDGLFDKNPNIYDDAVLRSHVSEITDDIIKSAGGAGSKFGTGGMLSKIKSAQMVFDNNGQMILMNGANPRDILKVLDGHNIGTYFAQGK |
2A1F Chain:A ((1-238)) | --LSQPIYKRILLKLSGEALQGEDGLGIDPAILDRMAVEIKELVEMGVEVSVVLGGGNLFRGAKLAKAGMNRVV--GDHMGMLATVMNGLAM---RDSLFRADVNAK--LMSAFQLNGICDTYNW-SEAIKMLREKRVVIFSA-----GT---GN-PFFTTDSTACLRGIEIEADVVLKATKVDGVYDC-------AKLYKNLSYAE--VIDK----------ELKVMDLSAFTLARDHGMPIRVFNMGKPGALRQVVTGTEEGTTICEG- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2A1F.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -138398 for 1889 contacts (-73.3/contact) +
2D Compatibility (PS) -24497 + (NN) -7680 + (LL) 892
1D Compatibility (HY) -6400 + (ID) 2050
Total energy: -178133.0 ( -94.30 by residue)
QMean score : 0.474
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